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2022.2

SPHN framework

  • Introduction
  • SPHN Dataset
  • SPHN RDF Schema
  • SHACLer
  • SPARQLer
  • Quality Assurance Framework
  • Terminology Service

External resources used

  • External terminologies
  • Naming conventions
  • ATC
  • CHOP
  • ICD-10-GM
  • LOINC
  • SNOMED CT
  • UCUM
  • Other terminologies

User guide - How to?

  • Access, read and use of SPHN content
  • Generate a SPHN project-specific RDF Schema
  • Instantiate data according to the project RDF Schema
  • Improve data quality through validation
  • SHACL constraints in the SHACLer
  • Visually explore data with GraphDB
  • Query data with SPARQL
  • Concept Flattening in the SPARQLer
  • Use Python and R with RDF data
  • Download external terminologies from the Terminology Service
  • FAIRification of External Terminologies in RDF for projects

Examples of Implementation

  • CHUV with Oracle
  • SPHN export application at USB
  • USZ RDF Pipeline early version based on CSharp
  • New Strategic USZ RDF Pipeline using SPHN Connector

Background information

  • RDF in SPHN
  • Semantic Web in SPHN
  • Resource Description Framework (RDF)
  • SHACL
  • SPARQL

Other

  • Contact Information
  • Acknowledgements
SPHN Semantic Framework
  • Search

© Copyright 2022, Personalized Health Informatics Group (PHI), SIB Swiss Institute of Bioinformatics. Revision 1c320d50.

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