Versions used in SPHN

This page describes which versions of the external terminologies provided in RDF are used in the different versions of the SPHN RDF Schema.

With each release of the SPHN RDF Schema, newer versions of the different terminologies are imported and used. Thus, data must be compatible with the versions of external terminologies imported as RDF into the SPHN RDF Schema for the codes to be recognised and identified by the triplestores. If the data provider has a coded value coming from a version that not compatible with the imported RDF external terminology in the SPHN RDF Schema, then that coded value may be provided using the sphn:Code class instead.

The following table indicates which versions of the external terminologies (provided as RDF files) can be used in each version of the SPHN RDF Schema. In other words, it indicates which versions of an external terminology are imported in the different releases of the SPHN RDF Schema.

External terminologies versions loaded in the three most recent versions of the SPHN RDF Schema

Terminology

Schema 2025.1

Schema 2024.2

Schema 2023.2

ATC

2016 to 2025

2016 to 2024

2016 to 2023

CHOP

2013 to 2025

2013 to 2024

2016 to 2023

ECO

20240719

2023-09-03

EDAM

1.25

1.25

EFO

v3.72.0

v3.61.0

EMDN

1.1 (2021-9-29)

1.1 (2021-9-29)

GENO

2023-10-08

2023-10-08

GenEpiO

2023-08-19

2023-08-19

HGNC

20241210

20231215

20221107

ICD-10-GM

2013 to 2025

2013 to 2024

2015 to 2023

ICD-O

ICD-O-3 version 2

LOINC

2.78

2.76

2.74

OBI

2024-10-25

2023-09-20

OncoTree

2021-11-02

ORDO

4.6

4.4

SNOMED CT

Dec 2024 (Int + CH edition)

Dec 2023 (Int + CH edition)

Dec 2022 (International edition)

SO

2021-11-22

2021-11-22

2021-11-22

UCUM

2025.1

2024.1

2023.1

Note

  1. Some of the SPHN RDF Schema versions support multiple versions of a terminology: ATC, CHOP and ICD-10-GM. This is due to the fact that a versioning strategy has been applied which includes also historical codes in the latest version of the terminology (see Versioning strategy of terminologies).

  2. An empty cell indicate that the external terminology is not supported as RDF in that version of the SPHN RDF Schema.

  3. UCUM is not provided with a specific version since it is a notation. Therefore, the version indicated corresponds to the versionIRI provided by the SPHN UCUM RDF files in the Terminology Service.

Namespace of terminologies used in SPHN

The section below highlights the different namespaces (ontology and version IRIs) given to the external terminologies provided in the Terminology Service as an RDF file. In addition, the IRI used for encoding the actual codes are also expressed in the section IRI for codes. Note that these are the IRIs that must be used by the data providers for encoding/annotating coded values of these terminologies. The version of the terminology being used in the different SPHN RDF schemas is highlighted in the Version IRI.

ATC namespace

Ontology IRI: https://biomedit.ch/rdf/sphn-resource/atc/

Version IRI example: https://biomedit.ch/rdf/sphn-resource/atc/2023/1

IRI for codes: https://www.whocc.no/atc_ddd_index/?code=

CHOP namespace

Ontology IRI: https://biomedit.ch/rdf/sphn-resource/chop/

Version IRI example: https://biomedit.ch/rdf/sphn-resource/chop/2023/4

IRI for codes: https://biomedit.ch/rdf/sphn-resource/chop/

ECO namespace

Ontology IRI: http://purl.obolibrary.org/obo/eco.owl

Version IRI example: http://purl.obolibrary.org/obo/eco/releases/2023-09-03/eco.owl

IRI for codes: http://purl.obolibrary.org/obo/ECO_

EDAM namespace

Ontology IRI: https://biomedit.ch/rdf/sphn-resource/edam/

Version IRI example: https://biomedit.ch/rdf/sphn-resource/edam/1.25

IRI for codes: http://edamontology.org/

EFO namespace

Ontology IRI: http://www.ebi.ac.uk/efo/efo.owl

Version IRI example: http://www.ebi.ac.uk/efo/releases/v3.72.0/efo.owl

IRI for codes: http://www.ebi.ac.uk/efo/EFO_

EMDN namespace

Ontology IRI: https://biomedit.ch/rdf/sphn-resource/emdn/

Version IRI example: https://biomedit.ch/rdf/sphn-resource/emdn/2021-09-29/1

IRI for codes: https://biomedit.ch/rdf/sphn-resource/emdn/

GENO namespace

Ontology IRI: http://purl.obolibrary.org/obo/geno.owl

Version IRI example: http://purl.obolibrary.org/obo/geno/releases/2022-08-10

IRI for codes: http://purl.obolibrary.org/obo/GENO_

GENEPIO namespace

Ontology IRI: http://purl.obolibrary.org/obo/genepio.owl

Version IRI example: http://purl.obolibrary.org/obo/genepio/releases/2023-08-19/genepio.owl

IRI for codes: http://purl.obolibrary.org/obo/GENEPIO_

HGNC namespace

Ontology IRI: https://biomedit.ch/rdf/sphn-resource/hgnc/

Version IRI example: https://biomedit.ch/rdf/sphn-resource/hgnc/20221107

IRI for codes: https://biomedit.ch/rdf/sphn-resource/hgnc/

ICD-10-GM namespace

Ontology IRI: https://biomedit.ch/rdf/sphn-resource/icd-10-gm/

Version IRI example: https://biomedit.ch/rdf/sphn-resource/icd-10-gm/2023/3

IRI for codes: https://biomedit.ch/rdf/sphn-resource/icd-10-gm/

ICD-O-3 namespace

Ontology IRI: https://data.jrc.ec.europa.eu/collection/ICDO3_ontology_en

Version IRI example: https://data.jrc.ec.europa.eu/collection/ICDO3_ontology_en/2.0

IRI for codes: https://data.jrc.ec.europa.eu/collection/ICDO3_O#

LOINC namespace

Ontology IRI: https://biomedit.ch/rdf/sphn-resource/loinc/

Version IRI example : https://biomedit.ch/rdf/sphn-resource/loinc/2.74/1

IRI for codes: https://loinc.org/rdf/

OBI namespace

Ontology IRI: http://purl.obolibrary.org/obo/obi.owl

Version IRI example : http://purl.obolibrary.org/obo/obi/2024-10-25/obi.owl

IRI for codes: http://purl.obolibrary.org/obo/OBI_

OncoTree namespace

Ontology IRI: https://biomedit.ch/rdf/sphn-resource/sphn/oncotree#

Version IRI example : https://biomedit.ch/rdf/sphn-resource/sphn/oncotree/2021-11-02

IRI for codes: https://biomedit.ch/rdf/sphn-resource/sphn/oncotree#

ORDO namespace

Ontology IRI: https://www.orphadata.com/data/ontologies/ordo/last_version/ORDO_en_4.4.owl

Version IRI example : https://www.orphadata.com/data/ontologies/ordo/last_version/ORDO_en_4.4.owl

IRI for codes: http://www.orpha.net/ORDO/Orphanet_

SNOMED CT namespace

Ontology IRI: http://snomed.info/sct/900000000000207008#

Version IRI example: http://snomed.info/sct/900000000000207008/version/20221231

IRI for codes: http://snomed.info/id/

SO namespace

Ontology IRI: http://purl.obolibrary.org/obo/so.owl

Version IRI example: http://purl.obolibrary.org/obo/so/2021-11-22

IRI for codes: http://purl.obolibrary.org/obo/SO_

UCUM namespace

Ontology IRI: https://biomedit.ch/rdf/sphn-resource/ucum/

Version IRI example: https://biomedit.ch/rdf/sphn-resource/ucum/2023/1

IRI for codes: https://biomedit.ch/rdf/sphn-resource/ucum/