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SPHN framework

  • Introduction
  • SPHN Dataset
  • SPHN RDF Schema
  • SPHN Metadata Catalog
  • SPHN FedData
  • SPHN Schema Forge
  • SPHN Connector
  • Terminology Service
  • SPHN Mocker

External terminologies used

  • External terminologies
  • Versions used in SPHN
  • Naming conventions for terminologies not in RDF

User guide - How to?

  • Generate a project-specific RDF Schema
  • Generate data according to a RDF schema
  • Validate data with SHACL rules
  • Managing your GraphDB instance
  • Loading data into GraphDB
  • Extract subsets of a graph
  • Visually explore data with GraphDB
  • Query data with SPARQL
  • Use Python and R with RDF data
  • Download external terminologies from the Terminology Service
  • FAIRify external terminologies in RDF

Concepts guidelines

  • Assessment concepts
  • Drug and related concepts
  • Lab concepts
  • Measurement concepts
  • Omics concepts
  • Representation of genetic variants
  • Provenance concepts
  • Medical Imaging concepts

Examples of Implementation

  • CHUV implementation of SPHN
  • HUG implementation of SPHN
  • Insel implementation of SPHN
  • USB implementation of SPHN
  • USZ implementation of SPHN
  • EOC Implementation of SPHN
  • LUKS implementation of SPHN
  • KSA Implementation of SPHN
  • KSB Implementation of SPHN
  • HOCH implementation of SPHN

Background information

  • RDF in SPHN
  • Semantic Web in SPHN
  • Resource Description Framework (RDF)
  • RDF Quads
  • SHACL
  • SPARQL

Other

  • Training and Videos
  • Contact Information
  • Acknowledgements
SPHN Semantic Framework
  • Search

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